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Michael T. Madigan received his B.S. in Biology and Education from Wisconsin State University–Stevens Point (1971) and his M.S. (1974) and Ph.D. (1976) in Bacteriology from the University of Wisconsin–Madison in the laboratory of Thomas Brock. Following a postdoc at Indiana University with Howard Gest, Madigan moved to Southern Illinois University Carbondale, where he taught courses in introductory microbiology and bacterial diversity as a professor of microbiology for 33 years. In 1988 Madigan was selected as the Outstanding Teacher in the College of Science and in 1993, the Outstanding Researcher. In 2001 he received the SIUC Outstanding Scholar Award. In 2003 he received the Carski Award for Distinguished Undergraduate Teaching from the American Society for Microbiology, and he is an elected Fellow of the American Academy of Microbiology. Madigan’s research is focused on bacteria that inhabit extreme environments, and for the past 20 years his emphasis has been Antarctic microbiology. Madigan has co-edited a major treatise on phototrophic bacteria and served for 10 years as chief editor of the journal Archives of Microbiology. He currently serves on the editorial board of the journals Environmental Microbiology and Antonie van Leeuwenhoek. Madigan’s other interests include forestry, swimming, reading, and caring for his dogs and horses. He lives on a quiet lake with his wife, Nancy, three dogs (Kato, Nut, and Merry), and three horses (Eddie, Gwen, and Georgie).
Kelly S. Bender received her B.S. in Biology from Southeast Missouri State University (1999) and her Ph.D. (2003) in Molecular Biology, Microbiology, and Biochemistry from Southern Illinois University Carbondale. Her dissertation research focused on the genetics of perchlorate-reducing bacteria. During her postdoctoral fellowship, Bender worked on the genetic regulation of sulfate-reducing bacteria in the laboratory of Judy Wall at the University of Missouri–Columbia. She also completed a transatlantic biotechnology fellowship at Uppsala University in Sweden researching regulatory small RNAs in bacteria. In 2006, Bender returned to her alma mater, Southern Illinois University Carbondale, as an Assistant Professor in the Department of Microbiology and in 2012 was tenured and promoted to Associate Professor. Her lab studies a range of topics including regulation in sulfate-reducing bacteria and the microbial community dynamics of sites impacted by acid mine drainage. Bender teaches courses in introductory microbiology and microbial diversity, has served on numerous federal grant review panels, and is an active member of the American Society for Microbiology (ASM). Her other interests include spending time with her daughter, Violet, and husband, Dick.
Daniel H. Buckley is a Professor at Cornell University in the School of Integrative Plant Science. He earned his B.S. in Microbiology (1994) at the University of Rochester and his Ph.D. in Microbiology (2000) at Michigan State University. His graduate research focused on the ecology of soil microbial communities and was conducted in the laboratory of Thomas M. Schmidt in affiliation with the Center for Microbial Ecology. Buckley’s postdoctoral research examined linkages between microbial diversity and biogeochemistry in marine microbial mats and stromatolites and was conducted in the laboratory of Pieter T. Visscher at the University of Connecticut. Buckley joined the Cornell faculty in 2003. His research program investigates the ecology and evolution of microbial communities in soils with a focus on the causes and consequences of microbial diversity. He has taught both introductory and advanced courses in microbiology, microbial diversity, and microbial genomics. He received a National Science Foundation Faculty Early Career Development (CAREER) award in 2005 for excellence in integrating research and education. He has served as Director of the Graduate Field of Soil and Crop Sciences at Cornell and Co-Director of the Microbial Diversity summer course of the Marine Biological Laboratory in Woods Hole, Massachusetts. He currently serves on the editorial boards of Applied and Environmental Microbiology and Environmental Microbiology. Buckley lives in Ithaca, New York, with his wife, Merry, and sons, Finn and Colin.
W. Matthew Sattley received his B.A. in Biology in 1998 from Blackburn College (Illinois) and his Ph.D. (2006) in Molecular Biology, Microbiology, and Biochemistry from Southern Illinois University Carbondale. His graduate studies focused on the microbiology of sulfur cycling and other biogeochemical processes in permanently ice-covered lakes of Antarctica. In his postdoctoral research at Washington University in Saint Louis, he studied the physiology and genomics of anoxygenic phototrophic bacteria in Robert Blankenship’s laboratory. Sattley then accepted a faculty appointment to the Department of Biology at MidAmerica Nazarene University (Kansas), where he supervised undergraduate research and taught courses in microbiology, environmental science, and cell biology. In 2010, Sattley transitioned to the Division of Natural Sciences at Indiana Wesleyan University, where he is a Professor of Biology and Director of the Hodson Summer Research Institute, a faculty-led summer research program for undergraduate students in the Natural Sciences. His research group investigates the ecology, diversity, and genomics of bacteria that inhabit extreme environments. Sattley is a member of the American Society for Microbiology (including its Indiana Branch) and the Indiana Academy of Science, and he currently serves as an expert reviewer for the undergraduate microbiology research journal Fine Focus. Sattley lives in Marion, Indiana, with his wife, Ann, and sons, Josiah and Samuel. Outside of teaching and research, Sattley enjoys playing drums, reading, motorcycling, and talking baseball and cars with his boys.
David A. Stahl received his B.S. degree in Microbiology from the University of Washington, Seattle, and completed graduate studies in microbial phylogeny and evolution with Carl Woese in the Department of Microbiology at the University of Illinois at Urbana–Champaign. Subsequent work as a postdoctoral fellow with Norman Pace, then at the National Jewish Hospital in Colorado, involved early applications of 16S rRNA-based sequence analysis to the study of natural microbial communities. In 1984 Stahl joined the faculty at the University of Illinois with appointments in Veterinary Medicine, Microbiology, and Civil Engineering. In 1994 he moved to the Department of Civil Engineering at Northwestern University, and in 2000 returned to the University of Washington as professor in the Departments of Civil and Environmental Engineering and Microbiology. Stahl is known for his work in microbial evolution, ecology, and systematics, and received the 1999 Bergey Award and the 2006 ASM Procter & Gamble Award in Applied and Environmental Microbiology. Stahl is an elected fellow of the American Academy of Microbiology and a member of the National Academy of Engineering. His main research interests surround the biogeochemistry of nitrogen and sulfur and the microbial communities that sustain the associated nutrient cycles. His laboratory was first to culture ammonia-oxidizing Archaea, a group believed to be the key mediators of this process in the nitrogen cycle. Stahl has taught several courses in environmental microbiology, was one of the founding editors of the journal Environmental Microbiology, and has served on many advisory committees. Outside the lab, Stahl enjoys hiking, bicycling, spending time with family, reading a good science fiction book, and—with his wife, Lin—renovating an old farmhouse on Bainbridge Island.
UNIT I: THE FOUNDATIONS OF MICROBIOLOGY
1. The Microbial World
2. Microbial Cell Structure and Function
3. Microbial Metabolism
4. Molecular Information Flow and Protein Processing
UNIT II: MICROBIAL GROWTH AND REGULATION
5. Microbial Growth and Its Control
6. Microbial Regulatory Systems
7. Molecular Biology of Microbial Growth
8. Viruses and Their Replication
UNIT III: GENOMICS AND GENETICS
9. Microbial Systems Biology
10. Viral Genomics
11. Genetics of Bacteria and Archaea
12. Biotechnology and Synthetic Biology
UNIT IV: MICROBIAL EVOLUTION AND DIVERSITY
13. Microbial Evolution and Systematics
14. Metabolic Diversity of Microorganisms
15. Functional Diversity of Microorganisms
16. Diversity of Bacteria
17. Diversity of Archaea
18. Diversity of Microbial Eukarya
UNIT V: MICROBIAL ECOLOGY AND ENVIRONMENTAL MICROBIOLOGY
19. Taking the Measure of Microbial Systems
20. Microbial Ecosystems
21. Nutrient Cycles in Nature
22. Microbiology of the Built Environment
23. Microbial Symbioses with Microbes, Plants, and Animals
UNIT VI: MICROBE-HUMAN INTERACTIONS AND THE IMMUNE SYSTEM
24. Microbial Symbioses with Humans
25. Microbial Infection and Pathogenesis
26. Innate Immunity: Broadly Specific Host Defenses
27. Adaptive Immunity: Highly Specific Host Defenses
28. Clinical Microbiology and Immunology
UNIT VII INFECTIOUS DISEASES AND THEIR TRANSMISSION
30. Person-to-Person Bacterial and Viral Diseases
31. Vectorborne and Soilborne Bacterial and Viral Diseases
32. Foodborne and Waterborne Bacterial and Viral Diseases
33. Eukaryotic Pathogens: Fungi, Protozoa, and Helminths