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Preface | p. v |
Contributors | p. ix |
An Introduction to Proteome Bioinformatics | p. 1 |
Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting | p. 7 |
Computational Approaches to Peptide Identification via Tandem MS | p. 23 |
Scoring and Validation of Tandem MS Peptide Identification Methods | p. 43 |
Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics | p. 55 |
Understanding and Exploiting Peptide Fragment Ion Intensities Using Experimental and Informatic Approaches | p. 73 |
Spectral Library Searching for Peptide Identification via Tandem MS | p. 95 |
De Novo Sequencing Methods in Proteomics | p. 105 |
Cross Species Proteomics | p. 123 |
Gene Model Detection Using Mass Spectrometry | p. 137 |
Signal Processing in Proteomics | p. 145 |
A High-Performance Reconfigurable Computing Solution for Peptide Mass Fingerprinting | p. 163 |
Mining Proteomic MS/MS Data for MRM Transitions | p. 187 |
OpenMS and TOPP: Open Source Software for LC-MS Data Analysis | p. 201 |
Trans-Proteomic Pipeline: A Pipeline for Proteomic Analysis | p. 213 |
Informatics and Statistics for Analyzing 2-D Gel Electrophoresis Images | p. 239 |
Automated Generic Analysis Tools for Protein Quantitation Using Stable Isotope Labeling | p. Ting-Yi Sung |
An Overview of Label-Free Quantitation Methods in Proteomics by Mass Spectrometry | p. 273 |
The PeptideAtlas Project | p. 285 |
Using the PRIDE Proteomics Identifications Database for Knowledge Discovery and Data Analysis | p. 297 |
Molecular Interactions and Data Standardisation | p. 309 |
Mass Spectrometer Output File Format mzML | p. 319 |
Managing Experimental Data Using FuGE | p. 333 |
Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats | p. 345 |
Computational Resources for the Prediction and Analysis of Native Disorder in Proteins | p. 369 |
Index | p. 395 |
Table of Contents provided by Ingram. All Rights Reserved. |
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The Used, Rental and eBook copies of this book are not guaranteed to include any supplemental materials. Typically, only the book itself is included. This is true even if the title states it includes any access cards, study guides, lab manuals, CDs, etc.