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9780815338673

Structure in Protein Chemistry

by ;
  • ISBN13:

    9780815338673

  • ISBN10:

    0815338678

  • Edition: 2nd
  • Format: Hardcover
  • Copyright: 2006-09-15
  • Publisher: Garland Science

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Summary

The second edition of Structure in Protein Chemistry showcases the latest developments and innovations in the field of protein structure analysis and prediction. The book begins by explaining how proteins are purified and describes methods for elucidating their sequences of amino acids and defining their posttranslational modifications. Comprehensive explanations of crystallography and of noncovalent forcesDLionic interactions, hydrogen bonding, and the hydrophobic effectDLact as a prelude to an exhaustive description of the atomic details of the structures of proteins. The resulting understanding of protein molecular structure forms the basis for discussions of the evolution of proteins, the symmetry of the oligomeric associations that produce them, and the chemical, mathematical, and physical basis of the techniques used to study their structures. The latter include image reconstruction, nuclear magnetic resonance spectroscopy, proton exchange, optical spectroscopy, electrophoresis, covalent cross-linking,chemical modification, immunochemistry, hydrodynamics, and the scattering of light, X-radiation, and neutrons. These procedures are applied to study the folding of polypeptides and the assembly of oligomers. Biological membranes and their proteins are also discussed. Structure in Protein Chemistry serves as a comprehensive textbook for advanced undergraduates and graduate students, as well as a useful reference for professionals.

Author Biography

Jack Kyte is Professor Emeritus in the Chemistry Department at the University of California in San Diego.

Table of Contents

Preface vii
Stereo Drawings xi
NEWT xiii
ExPASy xiii
Protein Data Bank xiii
Purification
1(54)
Partition into Stationary Phases and Chromatography
2(11)
Assay
13(7)
Purification of a Protein
20(12)
Molecular Charge
32(4)
Electrophoresis
36(9)
Criteria of Purity
45(2)
Heterogeneity
47(2)
Crystallization
49(6)
Electronic Structure
55(30)
π and σ
55(7)
Acids and Bases
62(7)
Tautomers
69(5)
Amino Acids
74(11)
Sequences of Polymers
85(64)
Sequencing of Polypeptides
85(10)
Cloning, Sequencing, Expressing, and Mutating of Deoxyribonucleic Acids
95(18)
Posttranslational Modification
113(13)
Oligosaccharides of Glycoproteins
126(23)
Crystallographic Molecular Models
149(40)
Maps of Electron Density
149(13)
The Molecular Model
162(10)
Refinement
172(17)
Noncovalent Forces
189(62)
Water
190(6)
Standard States and Units of Concentration
196(3)
Ionic Interactions
199(5)
The Hydrogen Bond
204(18)
Intramolecular and Intermolecular Processes: Molecularity and Approximation
222(8)
The Hydrophobic Effect
230(11)
Hydropathy
241(10)
Atomic Details
251(94)
Secondary Structure of the Polypeptide Backbone
251(16)
Stereochemistry of the Side Chains
267(5)
Hydropathy of the Side Chains
272(5)
Packing of the Side Chains
277(13)
Water
290(10)
Ionic Interactions
300(6)
Hydrogen Bonds
306(8)
Association of Proteins with Nucleic Acid
314(12)
Metalloproteins
326(19)
Evolution
345(62)
Molecular Phylogeny from Amino Acid Sequence
346(16)
Molecular Phylogeny from Tertiary Structure
362(14)
Domains
376(16)
Molecular Taxonomy
392(15)
Counting Polypeptides
407(44)
Molar Mass
408(13)
Electrophoresis on Gels of Polyacrylamide Cast in Solutions of Dodecyl Sulfate
421(2)
Sieving
423(8)
Cataloguing Polypeptides
431(8)
Cross-Linking
439(12)
Symmetry
451(78)
Rotational and Screw Axes of Symmetry
451(5)
Space Groups
456(10)
Oligomeric Proteins
466(19)
Isometric Oligomeric Proteins
485(14)
Helical Polymeric Proteins
499(9)
Heterologous Oligomeric Proteins
508(21)
Chemical Probes of Structure
529(26)
Covalent Modification
529(26)
Immunochemical Probes of Structure
555(18)
Physical Measurements of Structure
573(86)
Shape
573(19)
Absorption and Emission of Light
592(20)
Nuclear Magnetic Resonance
612(28)
Exchange of Protons
640(5)
Electron Paramagnetic Resonance
645(14)
Folding and Assembly
659(84)
Thermodynamics of Folding
659(29)
Kinetics of Folding
688(22)
Assembly of Oligomeric Proteins
710(7)
Assembly of Helical Polymeric Proteins
717(26)
Membranes
743(96)
The Bilayer
745(18)
The Proteins
763(44)
The Fluid Mosaic
807(32)
Index 839

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The New copy of this book will include any supplemental materials advertised. Please check the title of the book to determine if it should include any access cards, study guides, lab manuals, CDs, etc.

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