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9783527312856

Transcription Factors in the Nervous System: Development, Brain Function, and Diseases

by
  • ISBN13:

    9783527312856

  • ISBN10:

    3527312854

  • Format: Hardcover
  • Copyright: 2006-03-01
  • Publisher: Blackwell Pub

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What is included with this book?

Summary

This first book to cover neural development, neuronal survival and function on the genetic level outlines promising approaches for novel therapeutic strategies in fighting neurodegenerative disorders, such as Alzheimer's disease. Focusing on transcription factors, the text is clearly divided into three sections devoted to transcriptional control of neural development, brain function and transcriptional dysregulation induced neurological diseases. With a chapter written by Nobel laureate Eric Kandel, this is essential reading for neurobiologists, geneticists, biochemists, cell biologists, neurochemists and molecular biologists.

Author Biography

Since 1997 Gerald Thiel has been professor for Medical Biochemistry and Molecular Biology at the University of the Saarland, Germany. In 1987 he started his career as a post-doc at The Rockefeller University, New York, in the lab of the 2000 Nobel Prize Laureate Paul Greengard. At the same time he was visiting fellow at the Howard Hughes Medical Institute, University of Texas. In 1991 and 1992 he worked as an assistant professor for Molecular and Cellular Neuroscience at The Rockefeller University, and from 1992 to 1997 he was head of lab at the Institute for Genetics, University of Cologne, Germany. His current research interests are the regulation of neuronal gene transcription, signal transduction in the nervous system and the regulation of proliferation and programmed cell death in the nervous system.

Table of Contents

Preface XVII
List of Contributors XXI
Color Plates XXV
Part I Transcription Factors in Neural Development
1 Roles of Hes bH LH Factors in Neural Development
Ryoichiro Kageyarna Jun Hatakeyama, and Toshiyuki Ohtsuka
Abstract
3(1)
1.1 Introduction
3(1)
1.2 Structure and Transcriptional Activities of Hes Factors
4(4)
1.3 Regulation of Hes Gene Expression
8(1)
1.4 Expression of Hes Genes in the Developing Nervous System
9(2)
1.5 Maintenance of Neural Stem Cells by Hes Genes
11(4)
1.6 Promotion of Gliogenesis by Hes Genes
15(1)
1.7 Maintenance of the Isthmic Organizer by Hes Genes
16(1)
1.7 Perspective
16(2)
Acknowledgments
18(1)
Abbreviations
18(5)
2 The Role of Pax6 in the Nervous System during Development and in Adulthood: Master Control Regulator or Modular Function?
Nicole Haubst, Jack Favor, and Magdalena Götz
Abstract
23(1)
2.1 Introduction
23(3)
2.2 Molecular Features of Pax6
26(3)
2.2.1 The Paired Domain
26(1)
2.2.2 The Paired-Type Homeodomain
26(1)
2.2.3 Different Pax6 Isoforms
27(1)
2.2.4 Protein-Protein Interactions
28(1)
2.2.5 Post-Translational Modifications of Pax6
28(1)
2.3 Function of Pax6 in Development
29(9)
2.3.1 Function of Pax6 in the Developing Eye
29(2)
2.3.2 Function of Pax6 in the Developing Brain
31(1)
2.3.2.1 Telencephalon
33(1)
2.3.2.2 Diencephalon
36(1)
2.3.2.3 Cerebellum
37(1)
2.3.2.4 Spinal Cord
37(1)
2.4 Function of Pax6 in the Adult Brain
38(1)
2.5 Mechanisms of Pax6 Function
39(1)
2.6 Conclusions and Outlook
40(1)
Abbreviations
41(12)
3 Phox2a and Phox2b: Essential Transcription Factors for Neuron Specification and Differentiation
Uwe Ernsberger and Hermann Rohrer
Abstract
53(1)
3.1 Introduction
53(1)
3.2 Molecular Characteristics of Phox2 Genes and Proteins
54(2)
3.2.1 Sequence and Gene Structure Conservation in the Animal Kingdom
54(1)
3.2.2 Transcriptional Activation by Phox2 Proteins
54(2)
3.3 Physiological Relevance of Phox2 Transcription Factors
56(4)
3.3.1 Expression Pattern
57(1)
3.3.2 Effects of Phox2 Gene Mutations
58(1)
3.3.2.1 Autonomic Neural Crest Derivatives and Visceral Sensory Ganglia
58(1)
3.3.2.2 Central Noradrenergic Neurons
58(1)
3.3.2.3 Autonomic Centers in the Hindbrain
59(1)
3.3.3 Human Mutations
59(1)
3.4 Molecular Mechanism of Action in Different Lineages
60(6)
3.4.1 Sympathetic Neurons
60(1)
3.4.2 Parasympathetic Neurons
61(1)
3.4.3 Enteric Neurons
62(1)
3.4.4 Visceral Sensory Neurons of the Geniculate, Petrosal and Nodose Ganglia
62(1)
3.4.5 Central Noradrenergic Neurons
63(1)
3.4.6 Autonomic Centers in the Hindbrain
64(1)
3.4.6.1 Afferent Visceral Centers
64(1)
3.4.6.2 Efferent Visceral Centers
64(1)
3.4.7 Oculomotor (nIII) and Trochlear (nIV) Centers
65(1)
3.5 Conclusions and Outlook
66(2)
3.5.1 Distinct or Identical Functions for Phox2a and Phox2b?
66(1)
3.5.2 Master Control Genes for Noradrenergic Differentiation
67(1)
3.5.3 Master Control Genes for Autonomic Reflex Circuit Generation
68(1)
Acknowledgments
68(1)
Abbreviations
69(6)
4 Functions of LIM-Homeodomain Proteins in the Development of the Nervous System
Yangu Zhao, Nasir Malik, and Heiner Westphal
Abstract
75(1)
4.1 Introduction
75(1)
4.2 Common Structural Features and Classification of LIM-HD Proteins
75(1)
4.3 LIM-HD Proteins and the Development of Invertebrate Nervous Systems
76(3)
4.3.1 C. elegans
77(1)
4.3.2 Drosophila
78(1)
4.4 Functions of LIM-HD Proteins in the Development of Vertebrate Nervous Systems
79(6)
4.4.1 The Vertebrate Spinal Cord
80(2)
4.4.2 The Vertebrate Brain
82(1)
4.4.3 The Olfactory and Visual Sensory Systems
83(1)
4.4.4 LIM-HD Genes and Early Patterning Events in the Developing CNS
83(2)
4.5 Factors that Interact with LIM-HD Proteins
85(2)
4.6 Downstream Targets of LIM-HD Proteins
87(1)
4.7 Conclusion and Future Directions
88(1)
Abbreviations
88(7)
5 The Roles of Serum Response Factor in Brain Development and Function
Bernd Knöll and Alfred Nordheim
Abstract
95(1)
5.1 Serum Response Factor as a Transcription Factor
95(1)
5.2 Neuronal Expression Patterns of SRF and Partner Proteins
96(2)
5.3 SRF Target Genes with Brain Functions
98(1)
5.4 Essential Requirement for SRF in Neuronal Migration
98(2)
5.5 SRF and Partner Proteins in Neurite Outgrowth and Axonal Guidance
100(3)
5.6 SRF-Mediated Gene Expression in Learning and Memory
103(2)
5.7 SRF in Neurological Disorders
105(1)
5.8 Perspectives
106(1)
Acknowledgments
106(1)
Abbreviations
107(6)
6 RE-1 Silencing Transcription Factor (REST): Regulation of Neuronal Gene Expression via Modification of the Chromatin Structure
Gerald Thiel and Mathias Hohl
Abstract
113(1)
6.1 Tissue-Specific Gene Expression: The Molecular Basis for the Function of a Multicellular Organism
113(1)
6.2 Modular Structure of REST
114(1)
6.3 Biological Activity of REST
114(3)
6.4 Mechanism of Transcriptional Repression by REST: Modulation of the Chromatin Structure
117(3)
6.5 Lessons from the REST Knockout Mouse
120(2)
6.6 Cell Type-Specific Regulation of REST Target Genes
122(1)
6.7 The Role of REST in the Differentiation of Neural Stem Cells
123(1)
6.8 Involvement of REST in Brain Dysfunction and Disease
124(1)
6.9 Conclusion and Prospects
124(1)
Acknowledgments
125(1)
Abbreviations
125(4)
7 Roles of Tlx1 and Tlx3 and Neuronal Activity in Controlling Glutamatergic over GABAergic Cell Fates
Qiufu Ma and Le-ping Cheng
Abstract
129(1)
7.1 Introduction
129(1)
7.2 The Dorsal Horn of the Spinal Cord
130(1)
7.3 Neurogenesis in the Dorsal Spinal Cord
131(1)
7.4 The Tlx Family of Homeobox Proteins
131(3)
7.5 Tlx Gene Expression Marks Sensory Circuits
134(1)
7.6 Tlx Genes Serve as Binary Switches between Glutamatergic and GABAergic Transmitter Phenotypes
134(2)
7.7 Binary Decision between GABAergic and Glutamatergic Cell Fates is a Common Theme
136(1)
7.8 Coupling of Generic Transmitter Phenotypes and Region-Specific Neuronal Identities
136(1)
7.9 The Plasticity of Neurotransmitter Phenotypes
137(1)
7.10 Summary and Unsolved Problems
138(1)
Abbreviations
139(4)
8 Transcriptional Control of the Development of Central Serotonergic Neurons
Zhou-Feng Chen and Yu-Qiang Ding
Abstract
143(1)
8.1 Introduction
143(3)
8.2 Transcription Factors in the Development of 5–HT Neurons
146(1)
8.3 Transcription Factors Expressed in 5–HT Progenitor Cells
146(3)
8.3.1 Nkx2.2
146(2)
8.3.2 Mashl
148(1)
8.4 Transcription Factors Expressed in the Ventricular Zone and Postmitotic 5–HT Neurons
149(1)
8.4.1 Gata2 and Gata3
149(1)
8.5 Transcription Factors Expressed in Postmitotic 5–HT Neurons
150(5)
8.5.1 Lmx1b
150(3)
8.5.2 Pet1
153(2)
8.6 The Relationship between Lmxlb and Pet1
155(1)
8.7 Conclusions
156(1)
Abbreviations
156(7)
9 Role of Mac Homeodomain Factors in the Specification and Differentiation of Motor Neurons and Oligodendrocytes
Jun Cai and Mengsheng Qiu
Abstract
163(1)
9.1 Introduction
163(1)
9.2 Structural Features of Nkx Homeobox Genes Involved in Ventral Neural Patterning
164(2)
9.3 Selective Expression of Nkx Homeobox Genes in the Ventral Neural Tube
166(2)
9.4 Nkx Genes are Class II Components of the Homeodomain Protein Code for Ventral Neural Patterning and Cell Fate Specification
168(2)
9.5 Nkx Genes Control the Fate Specification and Differentiation of Motor Neurons
170(2)
9.5.1 Nkx6.1 and Nkx6.2 have Redundant Activities in Promoting Somatic Motor Neuron Fate Specification
170(1)
9.5.2 Nkx2.2 Represses Somatic Motor Neuron Fate but Promotes Visceral Motor Neuron Fate
171(1)
9.5.3 Nkx6 Proteins Control the Migration and Axonal Projection of Hindbrain vMN
172(1)
9.6 The Role of Nkx Genes in Oligodendrocyte Development
172(3)
9.6.1 Nkx6 Proteins Promote Olig2 Expression and Ventral Oligodendrogenesis in the Spinal Cord
173(1)
9.6.2 Nkx6 Proteins Suppress Olig2 Expression and Ventral Oligodendrogenesis in the Rostral Hindbrain
173(1)
9.6.3 Nkx2.2 Controls the Terminal Differentiation of Oligodendrocytes
174(1)
9.6.4 Nkx6.2 Homeobox Gene Regulates the Oligodendrocyte Myelination Process
175(1)
Acknowledgments
175(2)
Abbreviations
177(4)
10 Sox Transcription Factors in Neural Development
Michael Wegner and C. Claus Stolt
Abstract
181(1)
10.1 The Sox Family of Transcription Factors
181(1)
10.2 Sox Proteins and Neural Competence
182(1)
10.3 Sox Proteins and the Neuroepithelial Stem Cell
183(2)
10.4 Sox Proteins and the Neural Crest Stem Cell
185(4)
10.5 Sox Proteins in Neural Determination and Lineage Decisions
189(1)
10.6 Sox Proteins in Glial Differentiation
190(1)
10.7 Sox Proteins in Neuronal Differentiation
191(2)
10.8 Sox Proteins and their Molecular Mode of Action
193(2)
10.9 Conservation of Sox Protein Function in Nervous System Development
195(2)
Acknowledgments
197(1)
Abbreviations
197(10)
Part II Transcription Factors in Brain Function
11 The Role of CREB and CBP in Brain Function
Angel Barco and Eric R. Kandel
Abstract
207(1)
11.1 Introduction
207(1)
11.2 The CREB Family of Transcription Factors
208(3)
11.2.1 CREB Family Members and Close Friends
208(1)
11.2.2 Structural Features of the CREB Family of Transcription Factors
209(2)
11.2.3 Gene Structure and the Regulation of Expression of CREB Family Members
211(1)
11.3 The CREB Binding Protein
211(1)
11.3.1 Structure and Multifunction
212(1)
11.4 The CREB Activation Pathway
212(8)
11.4.1 Post-Translational Regulation of CREB Activity
214(1)
11.4.2 Regulation of CBP Function
214(2)
11.4.3 Other Modulators of the CREB Pathway
216(1)
11.4.4 CRE-Binding Activity and CREB Downstream Genes
216(4)
11.5 Functions of the CREB Activation Pathway in the Nervous System
220(12)
11.5.1 Regulation of Cellular Responses by the CREB Pathway
220(1)
11.5.1.1 CREB is Important for Neuronal Survival and Neuroprotection
221(1)
11.5.1.2 CREB is Required for Axonal Outgrowth and Regeneration
223(1)
11.5.1.3 CREB has a Role in Neurogenesis and Neuronal Differentiation
223(1)
11.5.1.5 CB P, Epigenetics and Long-Term Changes in Neuronal Function
228(1)
11.5.2 Regulation of Systemic Responses by the CREB Pathway
229(1)
11.5.2.1 CREB and Memory
229(1)
11.5.2.2 CREB and Circadian Rhythms
231(1)
11.5.2.3 CREB Function and Development
232(1)
11.6 Dysregulation of CREB Function and Disease in the Nervous System
232(4)
11.6.1 CREB and Addiction
233(1)
11.6.2 Mental Retardation
233(1)
11.6.3 CREB and Age-Related Memory Impairment
234(1)
11.6.4 CREB and Neurodegenerative Diseases
234(1)
11.6.4.1 Huntington Disease
234(1)
11.6.4.2 Alzheimer's Disease
235(1)
11.6.5 CREB and Mental Disorders: Depression and other Disorders of Mood
236(1)
11.7 Conclusions
236(1)
Abbreviations
236(7)
12 CCAAT Enhancer Binding Proteins in the Nervous System: Their Role in Development, Differentiation, Long-Term Synaptic Plasticity, and Memory
Cristina M. Alberini
Abstract
243(1)
12.1 The CCAAT Enhancer Binding Proteins (C/EBPs)
243(3)
12.2 The Role of C/EBPs in Development and Differentiation
246(4)
12.2.1 C/EBPs Play a Critical Role in Neurogenesis
247(1)
12.2.2 C/EBPs Play a Critical Role in Neuronal Cell Death
248(1)
12.2.3 C/EBP Expression in Glia
249(1)
12.3 The Role of C/EBPs in Synaptic Plasticity and Memory
250(5)
Abbreviations
255(4)
13 The Role of c-Jun in Brain Function
Gennadij Raivich and Axel Behrens
Abstract
259(1)
13.1 Introduction
259(1)
13.2 C-Jun Phosphorylation and Upstream Signaling
260(3)
13.2.1 Mitogen-Activated/Stress-Activated Protein Kinase (MAPK/SAPK) Level
260(1)
13.2.2 MAP Kinase Kinase (MEK/MKK) and MAP Kinase Kinase Kinase (MEKK) Level
261(1)
13.2.3 Scaffolding Proteins
261(1)
13.2.3.1 Multimodal Effects of Deletion
262(1)
13.3 Development
263(2)
13.4 Novelty, Learning and Memory, and Addiction
265(2)
13.4.1 Novelty and Pain
265(1)
13.4.2 Learning
266(1)
13.4.3 Addiction
266(1)
13.5 Seizures and Excitotoxicity
267(1)
13.6 Ischemia, Stroke, and Brain Trauma
268(2)
13.6.1 Biochemical Regulation
268(1)
13.6.2 Role of Jun
268(1)
13.6.3 Functional Role of JNK Cascade
269(1)
13.6.4 Direct Evidence
270(1)
13.7 Axotomy
270(3)
13.7.1 Regulation
271(1)
13.7.2 Functional Role: Only Partial Overlap with Jun and JNK
272(1)
13.8 Conclusions
273(1)
Abbreviations
273(12)
14 Expression, Function, and Regulation of Transcription Factor MEF2 in Neurons
Zixu Mao and Xuernin Wang
Abstract
285(1)
14.1 Introduction
285(1)
14.2 The MEF2 Family of Transcription Factors
285(4)
14.2.1 MEF2 Genes and Transcripts
286(1)
14.2.2 Structure of MEF2 Proteins
286(2)
14.2.3 Specific Interaction Between MEF2 and DNA
288(1)
14.3 Expression of Mef2 in Neurons
289(2)
14.3.1 Expression of mef2 Transcripts in the Central Nervous System
289(1)
14.3.2 Expression of MEF2 Proteins in Neurons
289(2)
14.4 Function of Mef2 in Neurons
291(3)
14.4.1 The Role of MEF2 in Neuronal Differentiation
291(1)
14.4.2 The Role of MEF2 in Neuronal Survival
291(2)
14.4.3 Regulatory Targets of MEF2 in Neurons
293(1)
14.5 Regulation of MEF2 in Neurons
294(7)
14.5.1 Regulation of MEF2 Transactivation Potential
294(2)
14.5.2 Regulation of MEF2 DNA Binding
296(1)
14.5.3 Regulation of MEF2 Stability
297(1)
14.5.4 Regulation of MEF2 Subcellular Localization
298(1)
14.5.5 Regulation of MEF2 by Alternative Splicing
299(1)
14.5.6 Regulation of MEF2 by Interaction with Co-Regulators
299(1)
14.5.7 Regulation of MEF2 by Calcium Signaling
300(1)
14.6 Future Studies
301(1)
Acknowledgments
301(1)
Abbreviations
302(5)
15 RORa: An Orphan that Staggers the Mind
Peter M. Gent and Bruce A. Hamilton
Abstract
307(1)
15.1 Introduction
307(1)
15.2 Identification and Biochemical Properties of RORa
308(5)
15.2.1 Identification
308(1)
15.2.2 Isoforms
308(1)
15.2.3 RORa Binding and Response Elements
308(2)
15.2.4 Crosstalk Between Factors
310(1)
15.2.5 Ligands or Cofactors?
310(1)
15.2.6 Co-activators
311(1)
15.2.7 Co-repressors
311(1)
15.2.8 Activation and Regulation of RORa Expression
312(1)
15.2.9 RORa Expression in the Nervous System
313(1)
15.3 Role of RORa in the Developing Cerebellum
313(3)
15.4 Roles of RORa in Other Tissues
316(1)
15.4.1 Suprachiasmatic Nuclei
316(1)
15.4.2 Peripheral Tissues
317(1)
15.5 In-Vivo Identification of RORa Targets
317(4)
15.5.1 Genetic Program Controlled by RORa in the Cerebellum
317(1)
15.5.2 Direct or Indirect Targets?
318(1)
15.5.3 Developmental Signaling Genes
318(2)
15.5.4 Calcium Signaling and Synaptic Function Genes
320(1)
15.6 Implication of RORa in SCA1 Disorder
321(1)
15.7 Summary
321(1)
Abbreviations
322(5)
16 The Role of NF-kB in Brain Function
Barbara Kaltschmidt, Ilja Mikenberg, Darius Widera, and Christian Kaltschmidt
Abstract
327(1)
16.1 Introduction
327(1)
16.2 The NF-kB/Rel Family of Transcription Factors
327(3)
16.2.1 The IkB Proteins: Inhibitors of NF-kB
328(2)
16.3 Canonical NF-kB Activation
330(13)
16.3.1 Activators of NF-kB
335(2)
16.3.2 Repressors of NF-kB
337(1)
16.3.3 Synaptic NF-kB
338(5)
Acknowledgments
343(1)
Abbreviations
343(10)
17 Calcineurin/NFAT Signaling in Development and Function of the Nervous System
Isabella A. Graef, Gerald R. Crabtree, and Fan Wang
Abstract
353(1)
17.1 Biochemistry of NEAT Signaling
353(8)
17.1.1 Biochemical Basis of Coincidence Detection and Signal Integration by NFAT Transcription Complexes
353(1)
17.1.2 The Mechanism of Nuclear Entry of NFATc Proteins.
354(2)
17.1.3 Discrimination of Calcium Signals and the Nuclear Exit of NFATc Proteins
356(3)
17.1.4 Combinatorial Assembly of NFAT Transcription Complexes Determines Specificity of Ca²+ Responses
359(1)
17.1.5 Dedication of CaN to NFATc Family Members
360(1)
17.1.6 Evolution of the Genes that Encode the Cytosolic Components, the NFATc Family
360(1)
17.2 Roles of NFAT Signaling in Axonal Outgrowth and Synaptogenesis
361(1)
17.3 A Possible Role for NFAT Signaling in Defining Pathways for Both Vessels and Peripheral Nerves
362(4)
17.4 Roles of NFAT Signaling in Later Development: Responses to Spontaneous Activity
366(4)
17.5 The Role of NFAT in Neuronal Survival
370(1)
17.6 Small Molecule Inhibitors of CaN are Powerful Probes of Neuronal Development
371(2)
17.6.1 The Mechanism of Action of FK506 and Cyclosporine A
371(1)
17.6.2 Use of CsA and FK506 in Studies of Neural Development and Function
372(1)
17.6.3 Assessing CaN Activity
372(1)
17.7 NFAT Signaling and Transcriptional Control in Human Disease
373(1)
17.7.1 Possible Defects in NFAT Signaling in Human Schizophrenia
373(1)
17.7.2 Down Syndrome and NFAT Signaling
373(1)
17.8 Conclusion
374(1)
Abbreviations
374(5)
18 Stimulus-Transcription Coupling in the Nervous System: The Zinc Finger Protein Egr-1
Oliver G. Rössler, Luisa Stefano, Inge Bauer, and Gerald Thiel
Abstract
379(1)
18.1 Introduction
379(1)
18.2 Modular Structure of Egr-1
379(2)
18.3 Intracellular Signaling Cascades Converging at the Egr-1 Gene
381(2)
18.4 The Egr-1 Promoter
383(2)
18.5 Lessons from Egr–/–Deficient Mice
385(1)
18.6 Egr-1 Regulates Synaptic Plasticity in the Nervous System
386(1)
18.7 Correlation Between Proliferation of Astrocytes and Egr-1 Biosynthesis
387(1)
18.8 Egr-1: A "Pro-apoptotic Protein" for Neurons?
387(3)
18.9 Conclusions and Future Prospects
390(1)
Acknowledgments
391(1)
Abbreviations
391(8)
Part III Transcription Factors in Neuronal Diseases
19 The Presenilin/g-Secretase Complex Regulates Production of Transcriptional Factors: Effects of FAD Mutations
Nikolaos K. Robakis and Philippe Marambaud
Abstract
399(1)
19.1 Introduction
399(1)
19.2 Processing of APP and FAD
400(2)
19.3 The Presenilins
402(1)
19.4 The Notch1 ICD (NICD) Mediates Transcriptional and Developmental Functions Associated with Notchl Receptor
403(1)
19.5 Transcriptional Function of the APP ICD (AICD)
404(1)
19.6 PS1 and b-Catenin-Mediated Transcription
405(1)
19.7 PS1 is a Critical Regulator of Cadherin-Dependent Cell-Cell Adhesion and Signal Transduction
406(2)
19.8 Conclusions
408(1)
Abbreviations
408(9)
20 Transcriptional Abnormalities in Huntington's Disease
Dimitri Krainc
Abstract
417(1)
20.1 Introduction
417(1)
20.2 Mutant Huntingtin Interferes with Specific Components of General Transcriptional Machinery
418(4)
20.3 Mutant Huntingtin Disrupts Sp1—TAF4 Transcriptional Pathway
422(2)
20.4 Deregulation of CRE-Dependent Transcription in HD
424(11)
20.5 Summary
435(1)
Abbreviations
435(1)
Acknowledgments
436(5)
Index 441

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