Genetics of Subpolar Fish and Invertebrates

by Gharrett, Anthony J.; Gustafson, Richard G.; Nielsen, Jennifer L.; Seeb, James E.; Seeb, Lisa W.

• ISBN13: 9781402020339
• ISBN10: 1402020333
• Format: Hardcover
• Copyright: 2004-04-01
• Publisher: Kluwer Academic Pub

Summary

Fisheries genetics researchers will find invaluable the thirty-eight peer-reviewed contributions in this book, presented at the 20th Lowell Wakefield Fisheries Symposium "Genetics of Subpolar Fish and Invertebrates," held in May 2002 in Juneau, Alaska. Looming over concerns of lost fisheries stocks and persistent erosion of genetic variability are predictions of global warming, which may further tax genetic resources. One consequence is an increased reliance on genetic applications to many aspects of fisheries management, aquaculture, and conservation. The contributions in this book are important to modern fisheries science and genetics, and illustrate the evolution of the field over the past decade. The improved technology provides tools to address increasingly complicated problems in traditional applications and ecological and behavioral studies. The union between molecular and quantitative genetics, where many of the major questions about population structure and evolution remain unanswered, will also benefit from the new technologies.

Table of Contents

Genetics of Subpolar Fish and Invertebrates
Anthony J. Gharrett
Richard G. Gustafson
Jennifer L. Nielsen
James E. Seeb
Lisa W. Seeb
William W. Smoker
Gary H. Thorgaard
Richard L. Wilmot
Acknowledgements	ix
Introduction
Introduction to genetics of subpolar fish and invertebrates	1	(6)
A.J. Gharrett
S. Keller
R.G. Gustafson
P. Johnson
J.L. Nielsen
J.E. Seeb
L.W. Seeb
W.W. Smoker
G.H. Thorgaard
R.L. Wilmot
Keynote
Using haplotype trees for phylogeographic and species inference in fish populations	7	(14)
A.R. Templeton
Genetics of populations: freshwater and anadromous species
Migration of Pacific Rim chum salmon on the high seas: insights from genetic data	21	(16)
L.W. Seeb
P.A. Crane
C.M. Kondzela
R.L. Wilmot
S. Urawa
N.V. Varnavskaya
J.E. Seeb
Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation	37	(14)
S. Sato
H. Kojima
J. Ando
H. Ando
R.L. Wilmot
L.W. Seeb
V. Efremov
L. LeClair
W. Buchholz
D.-H. Jin
S. Urawa
M. Kaeriyam
A. Urano
S. Abe
Smaller effective population sizes evidenced by loss of microsatellite alleles in tributary-spawning populations of sockeye salmon from the Kvichak River Alaska drainage	51	(12)
C. Habicht
J.B. Olsen
L. Fair
J.E. Seeb
Microsatellite DNA data indicate distinct native populations of kokanee, Oncorhynchus nerka, persist in the Lake Sammamish Basin, Washington	63	(18)
S.F. Young
M.R. Downen
J.B. Shaklee
Genetic structure of wild chinook salmon populations of Southeast Alaska and northern British Columbia	81	(14)
C.M. Guthrie III
R.L. Wilmot
Population structure and stock identification of steelhead trout (Oncorhynchus mykiss) in British Columbia and the Columbia River based on microsatellite variation	95	(16)
T.D. Beacham
K.D. Le
J.R. Candy
A comparison of genetic variation between an anadromous steelhead, Oncorhynchus mykiss, population and seven derived populations sequestered in freshwater for 70 years	111	(16)
F. Thrower
C. Guthrie III
J. Nielsen
J. Joyce
Genetic integrity and microgeographic population structure of westslope cutthroat trout, Oncorhynchus clarki lewisi, in the Pend Oreille Basin in Washington	127	(16)
S.F. Young
J.G. McLellan
J.B. Shaklee
Microsatellite variation in populations of Atlantic salmon from North Europe	143	(10)
V. Wennevik
Ø. Skaala
S.F. Titov
I. Studyonov
G. Naevdal
The rainbow smelt, Osmerus mordax, complex of Lake Utopia: threatened or misunderstood?	153	(14)
R.A. Curry
S.L. Currie
L. Bernatchez
R. Saint-Laurent
Genetics of populations: marine species
Mitochondrial DNA variation in northwestern Bering Sea walleye pollock, Theragra chalcogramma (Pallas)	167	(10)
V.A. Brykov
N.E. Polyakova
T.F. Priima
O.N. Katugin
Analysis of the genetic structure of northwestern Bering Sea walleye pollock, Theragra chalcogramma	177	(10)
E.A. Shubina
M.N. Mel'nikova
A.I. Glubokov
B.M. Mednikov
Genetic population structure of Pacific hake, Merluccius productus, in the Pacific Northwest	187	(14)
E. Iwamoto
M.J. Ford
R.G. Gustafson
Population structure of Alaskan shortraker rockfish, Sebastes borealis, inferred from microsatellite variation	201	(10)
A.P. Matala
A.K. Gray
J. Heifetz
A.J. Gharrett
Evidence for two highly differentiated herring groups at Goose Bank in the Barents Sea and the genetic relationship to Pacific herring, Clupea pallasi	211	(12)
K.E. Jørstad
Sub-arctic populations of European lobster, Homarus gammarus, in northern Norway	223	(10)
K.E. Jørstad
P.A. Prodohl
A.-L. Agnalt
M. Hughes
A.P. Apostolidis
A. Triantafyllidis
E. Farestveit
T.S. Kristiansen
J. Mercer
T. Svasand
Genetics of populations: methods and applications
Detecting specific populations in mixtures	233	(12)
J.H. Reynolds
W.D. Templin
Sampling issues affecting accuracy of likelihood-based classification using genetical data	245	(16)
B. Guinand
K.T. Scribner
A. Topchy
K.S. Page
W. Punch
M.K. Burnham-Curtis
Moderately and highly polymorphic microsatellites provide discordant estimates of population divergence in sockeye salmon, Oncorhynchus nerka	261	(14)
J.B. Olsen
C. Habicht
J. Reynolds
J.E. Seeb
Forensic DNA analysis of Pacific salmonid samples for species and stock identification	275	(12)
R.E. Withler
J.R. Candy
T.D. Beacham
K.M. Miller
Genetic variability: fitness and adaptation
Outbreeding depression in hybrids between spatially separated pink salmon, Oncorhynchus gorbuscha, populations: marine survival, homing ability, and variability in family size	287	(12)
S.E. Gilk
I.A. Wang
C.L. Hoover
W.W. Smoker
S.G. Taylor
A.K. Gray
A.J. Gharrett
Effects on embryo development time and survival of intercrossing three geographically separate populations of Southeast Alaska coho salmon, Oncorhynchus kisutch	299	(8)
K.L. Granath
W.W. Smoker
A.J. Gharrett
J.J. Hard
Major histocompatibility complex loci are associated with susceptibility of Atlantic salmon to infectious hematopoietic necrosis virus	307	(10)
K.M. Miller
J.R. Winton
A.D. Schulze
M.K. Purcell
T.J. Ming
Quantitative trait loci analyses for meristic traits in Oncorhynchus mykiss	317	(16)
K.M. Nichols
P.A. Wheeler
G.H. Thorgaard
Genetic variability: phenotype and maintenance of variation
The mating system of steelhead, Oncorhynchus mykiss, inferred by molecular analysis of parents and progeny	333	(12)
T.R. Seamons
P. Bentzen
T.P. Quinn
Polygamous mating and high levels of genetic variation in lingcod, Ophiodon elongatus, of the Strait of Georgia, British Columbia	345	(14)
R.E. Withler
J.R. King
J.B. Marliave
B. Beaith
S. Li
K.J. Supernault
K.M. Miller
Aquaculture genetics: interactions of cultured and wild fish
Differential reproductive success of sympatric, naturally spawning hatchery and wild steelhead, Oncorhynchus mykiss	359	(12)
J.E. McLean
P. Bentzen
T.P. Quinn
Genetic variation within and between domesticated chinook salmon, Oncorhynchus tshawytscha, strains and their progenitor populations	371	(8)
J.E. Kim
R.E. Withler
C. Ritland
K.M. Cheng
Lopsided fish in the Snake River Basin -- fluctuating asymmetry as a way of assessing impact of hatchery supplementation in chinook salmon, Oncorhynchus tshawytscha	379	(16)
O. Johnson
K. Neely
R. Waples
Temporal comparisons of genetic diversity in Lake Michigan steelhead, Oncorhynchus mykiss, populations: effects of hatchery supplementation	395	(14)
M.L. Bartron
K.T. Scribner
Aquaculture genetics: applications
Genetic selection and molecular analysis of domesticated rainbow trout for enhanced growth on alternative diet sources	409	(10)
K. Overturf
D. Bullock
S. LaPatra
R. Hardy
Improvement of sperm motility of sex-reversed male rainbow trout, Oncorhynchus mykiss, by incubation in high-pH artificial seminal plasma	419	(8)
T. Kobayashi
S. Fushiki
K. Ueno
Temporal and spatial occurrence of female chinook salmon carrying a male-specific genetic marker in the Columbia River watershed	427	(6)
T.R. Chowen
J.J. Nagler
Phylogenetics
Molecular systematics and evolution of the growth hormone introns in the Salmoninae	433	(8)
R.B. Phillips
M.P. Matsuoka
N.R. Konkol
S. McKay
Karyological differentiation of northern Dolly Varden and sympatric chars of the genus Salvelinus in northeastern Russia	441	(8)
S. V. Frolov
V. N. Frolova
Differences between two subspecies of Dolly Varden, Salvelinus malma, revealed by RFLP-PCR analysis of mitochondrial DNA	449	(12)
A.G. Oleinik
L.A. Skurikhina
S.V. Frolov
V.A. Brykov
I.A. Chereshnev
Use of microsatellite locus flanking regions for phylogenetic analysis? A preliminary study of Sebastes subgenera	461
T. Asahida
A.K. Gray
A.J. Gharrett