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9780262072298

Microarrays for the Neurosciences : An Essential Guide

by
  • ISBN13:

    9780262072298

  • ISBN10:

    0262072297

  • Format: Hardcover
  • Copyright: 2002-04-30
  • Publisher: Mit Pr

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Summary

The effort to sequence the human genome has generated a new discipline, "functional genomics," or the study of the relationship between the genetic code and its biologic potential. Gene expression studies are made possible not only by the decoding of the human genome, but by the development of new technologies. The preeminent technology in this area, DNA microarrays, is helping to revolutionize the field of neuroscience. Rather than looking at one gene at a time, researchers using DNA microarrays can monitor the expression patterns of large numbers of genes simultaneously. Bridging the traditional gap between molecular neurobiology and systems neurobiology, DNA microarray technology has the potential to elevate molecular genetic studies of the nervous system to the system level. This book provides a comprehensive guide to the use of DNA microarrays in neuroscience and provides approaches that are applicable to other complex biological systems. Human nervous system tissue is remarkably complex. The number of cell types, the architecture, the developmental program, and the importance of environmental factors in development and functioning all pose particular challenges to the researcher using gene expression studies. After an overview of the technology, the book discusses array scanning and image application, statistical methods for array analysis, specific applications of gene expression studies in the central nervous system, the use of postmortem human tissue, and novel methods for using microarray data to develop hypotheses about regulatory networks.

Author Biography

Daniel H. Geschwind is Assistant Professor of Neurology and Director of the Neurogenetics Program at the University of California at Los Angeles School of Medicine Jeffrey P. Gregg is Assistant Professor of Pathology and Director of Molecular Pathology at the University of California at Davis School of Medicine

Table of Contents

Foreword ix
Preface xi
Microarrays: An Overview
1(28)
Jeffrey P. Gregg
Microarray Scanning and Data Acquisition
29(34)
Siobhan Pickett
Tient Basarsky
Damian Verdnik
David Wellis
Microarray Image and Data Analysis
63(46)
Shishir Shah
Soheil Shams
Statistical Inference in Array Genomics
109(32)
Robert Nadon
Erik Woody
Peide Shi
Nezar Rghei
Hermann Hubschle
Edward Susko
Peter Ramm
cDNA Array Strategies and Alternative Approaches in Neuroscience: Focus on Radioactive Probes
141(16)
Kevin G. Becker
Tanya Barrett
Laurie W. Whitney
Custom-Built cDNA Arrays for the Study of Neuronal Differentiation and Disease: The Smart Chip
157(18)
Lillian W. Chiang
Dave Ficenec
Jill M. Grenier
Oligonucleotide Arrays and Gene Expression Profiting of the Brain: Brainiacs Express Themselves
175(26)
Tarif A. Awad
David J. Lockhart
Carrolee Barlow
The Use of Fixed Human Postmortem Brain Tissue to Study mRNA Expression in Neurodegenerative Diseases: Applications of Microdissection and mRNA Amplification
201(36)
Vivianna M. D. Van Deerlin
Stephen D. Ginsberg
Virginia M.-Y. Lee
John Q. Trojanowski
Development of Microarrays to Study Gene Expression in Tissue and Single Cells: Analysis of Neural Transmission
237(18)
Marie-Claude Potier
Nathalie Gibelin
Bruno Cauli
Beatrice Le Bourdelles
Bertrand Lambolez
Geoffroy Golfier
Sonia Kuhlmann
Philippe Marc
Frederic Devaux
Jean Rossier
Custom cDNA Microarrays Derived from Subtracted Libraries for Neural Gene Discovery and Expression Analysis
255(18)
Daniel H. Geschwind
Stanley F. Nelson
Tracing Genetic Information Flow from Gene Expression to Pathways and Regulatory Networks
273(28)
Stefanie Fuhrman
Patrik D'haeseleer
Shoudan Liang
Roland Somogyi
Appendix A. Informatics and Web Resources 301(4)
Appendix B. Company and Array-Related Web Resources 305(6)
Contributors 311(4)
Abbreviations 315(4)
Index 319

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The New copy of this book will include any supplemental materials advertised. Please check the title of the book to determine if it should include any access cards, study guides, lab manuals, CDs, etc.

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