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9783540280088

Advances in Bioinformatics and Computational Biology : Brazilian Symposium on Bioinformatics, BSB 2005 - Sao Leopoldo Brazil, July 27-29 2005 - Proceedings

by ; ;
  • ISBN13:

    9783540280088

  • ISBN10:

    3540280081

  • Format: Paperback
  • Copyright: 2005-09-01
  • Publisher: Springer-Verlag New York Inc
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Supplemental Materials

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Summary

This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2005, held in Sao Leopoldo, Brazil in July 2005. The 15 revised full papers and 10 revised extended abstracts presented together with 3 invited papers were carefully reviewed and selected from 55 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.

Table of Contents

Invited Papers
Differential Gene Expression in the Auditory System
Irene S. Gabashvili, Richard J. Carter, Peter Markstein, Anne B.S. Giersch
1(8)
Searching for Non-coding RNA
Walter L. Ruzzo
9(2)
Cyberinfrastructure for PathoSystems Biology
Bruno W.S. Sobral
11(17)
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites
Joel Rozowsky, Paul Bertone, Thomas Royce, Sherman Weissman, Michael Snyder, Mark Gerstein
28(2)
Full Papers
Perturbing Thermodynamically Unfeasible Metabolic Networks
R. Nigam, S. Liang
30(12)
Protein Cellular Localization with Multiclass Support Vector Machines and Decision Trees
Ana Carolina Lorena, André C.P.L.F. de Carvalho
42(12)
Combining One-Class Classifiers for Robust Novelty Detection in Gene Expression Data
Eduardo J. Spinosa, André C.P.L.F. de Carvalho
54(11)
Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data
Katti Faceli, André C.P.L.F. de Carvalho, Marcilio C.P. de Souto
65(12)
Machine Learning Techniques for Predicting Bacillus subtilis Promoters
Meika I. Monteiro, Marcilio C.P. de Souto, Luiz M.G. Gonçalves, Lucymara F. Agnez-Lima
77(8)
An Improved Hidden Markov Model Methodology to Discover Prokaryotic Promoters
Adriana Neves dos Reis, Ney Lemke
85(10)
Modeling and Property Verification of Lactose Operon Regulation
Marcelo Cezar Pinto, Luciana Foss, José Carlos Merino Mombach, Leila Ribeiro
95(12)
YAMONES: A Computational Architecture for Molecular Network Simulation
Guilherme Balestieri Bedin, Ney Lemke
107(11)
Structure Prediction and Docking Studies of Chorismate Synthase from Mycobacterium Tuberculosis
Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
118(10)
Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction
Georgios Joannis Pappas Jr., Shankar Subramaniam
128(13)
Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukaryotic Organisms
Mauricio de Alvarenga Mudado, Estevam Bravo-Neto, José Miguel Ortega
141(12)
Diet as a Pressure on the Amino Acid Content of Proteomes
Francisco Prosdocimi, José Miguel Ortega
153(7)
A Method for Comparing Three Genomes
Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos J.M. Viana, Daniel A.S. Anjos, Maria Emilia M.T. Walter
160(10)
Comparison of Genomic DNA to cDNA Alignment Methods
Miguel Calves, Zanoni Dias
170(11)
Segmentation and Centromere Locating Methods Applied to Fish Chromosomes Images
Elaine Ribeiro de Faria, Denise Guliato, Jean Carlo de Sousa Santos
181(9)
Extended Abstracts
Sequence Motif Identification and Protein Family Classification Using Probabilistic Trees
Florencia Leonardi, Antonio Calves
190(4)
Prediction of Myotoxic and Neurotoxic Activities in Phospholipases A2 from Primary Sequence Analysis
Fabiano Pazzini, Fernanda Oliveira, Jorge A. Guimarães, Hermes Luis Neubauer de Amorim
194(4)
Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project
Thiago M. Venancio, Ricardo DeMarco, Katia C.P. Oliveira, Ana Carolina Quirino Simoes, Aline Maria da Silva, Sergio Verjovski-Almeida
198(4)
SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers
Ana C.Q. Simoes, Aline M. da Silva, Sergio Verjovski-Almeida, Eduardo M. Reis
202(4)
New EST Trimming Strategy
Christian Baudet, Zanoni Dias
206(4)
A Modification of the Landau-Vishkin Algorithm Computing Longest Common Extensions via Suffix Arrays
Rodrigo de Castro Miranda, Mauricio Ayala-Rincón
210(4)
The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid Environment
Alan Wilter, Carla Osthoff, Cristiane Oliveira, Diego E.B. Gomes, Eduardo Hill, Laurent E. Dardenne, Patricia M. Barros, Pedro A.A.G.L. Loureiro, Reynaldo Novaes, Pedro G. Pascutti
214(4)
Analysis of Structure Prediction Tools in Mutated MeCP-2
Dino Franklin, Ivan da Silva Sendin
218(4)
Protein Loop Classification Using Artificial Neural Networks
Armando Vieira, Baldomero Oliva
222(4)
VIZ - A Graphical Open-Source Architecture for Use in Structural Bioinformatics
Ricardo M. Czekster, Osmar Norberto de Souza
226(4)
Selection of Data Sets of Motifs as Attributes in the Process of Automating the Annotation of Proteins' Keywords
Ana L.C. Bazzan, Cassia T. dos Santos
230(4)
Bioinformatics Tools for HIV-1 Identification in Southern Brazilian States
Ardala Breda, Cláudia Lemelle Fernandes, Sabrina Esteves de Matos Almeida, Heitor Moreira Franco, Maria Lúcia Rosa Rossetti, Rosângela Rodrigues, Luis Fernando Brigido, Elizabeth Cortez-Herrera
234(4)
Fact and Task Oriented System for Genome Assembly and Annotation
Luciano A. Digiampietri, Julia M. Perdigueiro, Aloisio J. de Almeida Junior, Daniel M. Faria, Eric H. Ostroski, Gustavo G.L. Costa, Marcelo C. Perez
238(4)
A Clustering Strategy to Find Similarities in Mycoplasma Promoters
João Francisco Valiati, Paulo Martins Engel
242(4)
Gene Prediction by Syntenic Alignment
Said Sadique Adi, Carlos Eduardo Ferreira
246(5)
Real Time Immersive Visualization and Manipulation of the Visible Human Data Set
Ilana de Almeida Souza, Claudiney Sanches Junior, André Luiz Miranda da Rosa, Patricia Trautenmüller, Thiago Tognoli Lopes, Marcelo Knörich Zuffo
251(6)
Author Index 257

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