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Preface | p. v |
Contributors | p. xi |
Bioinformatics Framework for Comparative Proteomics | |
Protein Bioinformatics Databases and Resources | p. 3 |
A Guide to UniProt for Protein Scientists | p. 25 |
InterPro Protein Classification | p. 37 |
Reactome Knowledgebase of Human Biological Pathways and Processes | p. 49 |
eFIP: A Tool for Mining Functional Impact of Phosphorylation from Literature | p. 63 |
A Tutorial on Protein Ontology Resources for Proteomic Studies | p. 77 |
Structure-Guided Rule-Based Annotation of Protein Functional Sites in UniProt Knowledgebase | p. 91 |
Proteomic Bioinformatics | |
Modeling Mass Spectrometry-Based Protein Analysis | p. 109 |
Protein Identification from Tandem Mass Spectra by Database Searching | p. 119 |
LC-MS Data Analysis for Differential Protein Expression Detection | p. 139 |
Protein Identification by Spectral Networks Analysis | p. 151 |
Software Pipeline and Data Analysis for MS/MS Proteomics: The Trans-Proteomic Pipeline | p. 169 |
Analysis of High-Throughput ELISA Microarray Data | p. 191 |
Proteomics Databases and Repositories | p. 213 |
Preparing Molecular Interaction Data for Publication | p. 229 |
Submitting Proteomics Data to PRIDE Using PRIDE Converter | p. 237 |
Automated Data Integration and Determination of Posttranslational Modifications with the Protein Inference Engine | p. 255 |
An Integrated Top-Down and Bottom-Up Strategy for Characterization of Protein Isoforms and Modifications | p. 293 |
Comparative Proteomics in Systems Biology | |
Phosphoproteome Resource for Systems Biology Research | p. 307 |
Protein-Centric Data Integration for Functional Analysis of Comparative Proteomics Data | p. 323 |
Integration of Proteomic and Metabolomic Profiling as well as Metabolic Modeling for the Functional Analysis of Metabolic Networks | p. 341 |
Time Series Proteome Profiling | p. 365 |
Index | p. 379 |
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The Used, Rental and eBook copies of this book are not guaranteed to include any supplemental materials. Typically, only the book itself is included. This is true even if the title states it includes any access cards, study guides, lab manuals, CDs, etc.