Bioinformatics Research and Applications: 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011, Proceedings

by Chen, Jianer; Wang, Jianxin; Zelikovsky, Alexander

• ISBN13: 9783642212598
• ISBN10: 364221259X
• Format: Paperback
• Copyright: 2011-06-30
• Publisher: Springer-Verlag New York Inc

Summary

This volume constitutes the refereed proceedings of the 7th International Symposium on Bioinformatics Research and Applications, ISBRA 2011, held in Changsha, China, in May 2011.The 36 revised full papers presented together with 4 invited talks were carefully reviewed and selected from 92 submissions. Topics presented span all areas of bioinformatics and computational biology, including the development of experimental or commercial systems.

Table of Contents

Phylogenetics of Heterogeneous Samples	p. 1
OMG! Orthologs for Multiple Genomes - Competing Formulations	p. 2
Phylogenetic Analysis of Whole Genomes	p. 4
Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications	p. 8
Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach	p. 11
Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information	p. 12
Computing the Protein Binding Sites	p. 25
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm	p. 37
Prediction of Essential Genes by Mining Gene Ontology Semantics	p. 49
High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs	p. 61
Component-Based Matching for Multiple Interacting RNA Sequences	p. 73
A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient	p. 87
Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes	p. 99
Algorithms to Detect Multiprotein Modularity Conserved during Evolution	p. 111
The Kernel of Maximum Agreement Subtrees	p. 123
A Consensus Approach to Predicting Protein Contact Map via Logistic Regression	p. 136
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees	p. 148
Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation	p. 160
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters	p. 172
Fast Local Search for Unrooted Robinson-Foulds Supertrees	p. 184
A Metric for Phylogenetic Trees Based on Matching	p. 197
Describing the Orthology Signal in a PPI Network at a Functional, Complex Level	p. 209
Algorithms for Rapid Error Correction for the Gene Duplication Problem	p. 227
TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction Prediction	p. 240
Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach	p. 253
In Silico Evolution of Multi-scale Microbial systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer	p. 262
Comparative Evalutaion of Set-Level Techniques in Microarray Classification	p. 274
Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression Data
A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance	p. 297
The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations	p. 306
Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction	p. 320
A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks	p. 332
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks	p. 344
Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram Method	p. 358
Multi-label Correlated Semi-supervised Learning for Protein Function Prediction	p. 368
Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA	p. 380
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data	p. 392
An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes	p. 404
A Systematic Comparison of Genome Scale Clustering Algorithms	p. 416
Mining Biological Interaction Networks Using Weighted Quasi-Bicliques	p. 428
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees	p. 440
Author Index	p. 453
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