Data Integration in the Life Sciences: 4th International Workshop, Dils 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings

by Cohen-boulakia, Sarah

• ISBN13: 9783540732549
• ISBN10: 3540732543
• Edition: 1st
• Format: Paperback
• Copyright: 2007-09-01
• Publisher: SPRINGER

Summary

This book constitutes the refereed proceedings of the 4th International Workshop on Data Integration in the Life Sciences, DILS 2007, held in Philadelphia, PA, USA in July 2007.The 19 revised full papers presented together with 2 keynote talks were carefully reviewed and selected from 52 submissions. The papers adress all current issues in data integration and data management from the life science point of view and are organized in topical sections on new architectures and experience on using systems, managing and designing scientific workflows, mapping and matching techniques, modeling of life science data, and annotation in data integration.

Table of Contents

Enabling the molecular medicine revolution through network-centric biomedicine	p. 1
Phyl-O'Data (POD) from tree of life : integration challenges from yellow slimy things to black crunchy stuff	p. 3
Automatically constructing a directory of molecular biology databases	p. 6
The Allen brain atlas : delivering neuroscience to the Web on a genome wide scale	p. 17
Toward an integrated RNA motif database	p. 27
B-fabric : a data and application integration framework for life sciences research	p. 37
SWAMI : integrating biological databases and analysis tools within user friendly environment	p. 48
[superscript my]Grid and UTOPIA : an integrated approach to enacting and visualising in silico experiments in the life sciences	p. 59
A high-throughput bioinformatics platform for mass spectrometry-based proteomics	p. 71
Bioinformatics service reconciliation by heterogeneous schema transformation	p. 80
A formal model of dataflow repositories	p. 105
Project histories : managing data provenance across collection-oriented scientific workflow runs	p. 122
Fast approximate duplicate detection for 2D-NMR spectra	p. 139
Ontology-supported machine learning and decision support in biomedicine	p. 156
Instance-based matching of large life science ontologies	p. 172
Data integration and pattern-finding in biological sequence with TESS's annotation grammar and extraction language (AnGEL)	p. 188
Inferring gene regulatory networks from multiple data sources via a dynamic Bayesian network with structural EM	p. 204
Accelerating disease gene identification through integrated SNP data analysis	p. 215
What's new? : what's certain? - scoring search results in the presence of overlapping data sources	p. 231
Using annotations from controlled vocabularies to find meaningful associations	p. 247
CONANN : an online biomedical concept annotator	p. 264
Table of Contents provided by Blackwell. All Rights Reserved.