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Preface to the MIT Press Edition | p. xi |
Preface to the Original Edition | p. xiii |
Introduction: Discovering Complexity-Further Perspectives | p. xvii |
The Appearance of a New Mechanistic Philosophy of Science | p. xvi |
Discovery Heuristics: Conceptual and Experimental | p. xx |
Decomposition and Localization | p. xxviii |
Recomposing and Situating Mechanisms | p. xxxvii |
Model Systems, Conserved Mechanisms, and Generalization | p. xl |
Rethinking Emergence | p. xliv |
Conclusion | p. xlvii |
Scientific Discovery and Rationality | |
Cognitive Strategies and Scientific Discovery | p. 3 |
Rationalizing Scientific Discovery | p. 3 |
Procedural Rationality | p. 11 |
Complex Systems and Mechanistic Explanations | p. 17 |
Mechanistic Explanation | p. 17 |
Decomposition and Localization | p. 23 |
Hierarchy and Organization | p. 27 |
Conclusion: Failure of Localization | p. 31 |
Emerging Mechanisms | |
Introduction | p. 35 |
Identifying the Locus of Control | p. 39 |
Introduction: Identifying System and Context | p. 39 |
External Control: The Environment as a Control | p. 41 |
Internal Control: The System as a Control | p. 47 |
Fixing on a Locus of Control: the Cell in Respiration | p. 51 |
Conclusion: Localization of Function | p. 59 |
Direct Localization | p. 63 |
Introduction: Relocating Control | p. 63 |
Phrenology and Cerebral Localization | p. 65 |
Competing Models of Cellular Respiration | p. 72 |
Conclusion: Direct Localization and Competing Mechanisms | p. 88 |
The Rejection of Mechanism | p. 93 |
Introduction: Mechanism and Its Opponents | p. 93 |
Flourens and the Integrity of the Nervous System | p. 95 |
The Vitalist Opposition to Mechanistic Physiology | p. 99 |
Conclusion: Setting for Descriptions | p. 113 |
Elaborating Mechanisms | |
Introduction | p. 119 |
Complex Localization | p. 125 |
Introduction: Constraints on Localization | p. 125 |
Top-Down Constraints | p. 128 |
Bottom-Up Constraints | p. 138 |
Conclusion: The Rise and Decline of Decomposability | p. 145 |
Integrated Mechanisms | p. 149 |
Introduction: Replacing a Direct Localization | p. 149 |
Direct Localization of Fermentation in Zymase | p. 153 |
A Complex Linear Model of Fermentation | p. 156 |
An Integrated System Responsible for Fermentation | p. 163 |
Conclusion: The Discovery of Integration | p. 168 |
Reconstituting the Phenomena | p. 173 |
Introduction: Biochemical Genetics | p. 173 |
Classical Genetics | p. 175 |
Developmental Genetics | p. 181 |
One Gene/One Enzyme | p. 188 |
Conclusion: Reconstituting the Phenomena | p. 192 |
Emergent Mechanism | |
Introduction | p. 199 |
"Emergent" Phenomena in Interconnected Networks | p. 202 |
Introduction: Dispensing with Modules | p. 202 |
Hierarchical Control: Hughlings Jackson's Analysis of the Nervous Systems | p. 203 |
Parallel Distributed Processing and Cognition | p. 210 |
Distributed Mechanisms for Genomic Regulation | p. 223 |
Conclusion: Mechanistic Explanations without Functional Decomposition and Localization | p. 227 |
Constructing Causal Explanations | p. 230 |
Decomposition and Localization in Perspective | p. 230 |
Four Constraints on Development | p. 234 |
Conclusion: Looking Forward | p. 243 |
Notes | p. 245 |
References | p. 257 |
Index | p. 281 |
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