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9783540490241

DNA Computing: 12th International Meeting on DNA Computing, DNA12, Seoul, Korea, June 5-9, 2006, Revised Selected Papers

by
  • ISBN13:

    9783540490241

  • ISBN10:

    3540490248

  • Edition: 1st
  • Format: Paperback
  • Copyright: 2007-01-01
  • Publisher: SPRINGER

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Summary

This book constitutes the thoroughly refereed postproceedings of the 12th International Meeting on DNA Computing, DNA12, held in Seoul, Korea in June 2006. The 34 revised full papers presented were carefully selected during two rounds of reviewing and improvement from an initial total of 72 submissions. The papers are organized in topical sections on molecular and membrane computing models, complexity analysis, sequence and tile designs and their properties, DNA tile self-assembly models, simulator and software for DNA computing, DNA computing algorithms and new applications, novel experimental approaches, and experimental solutions.

Table of Contents

Computing with spiking neural P systems : traces and small universal systemsp. 1
Minimal parallelism for polarizationless P systemsp. 17
P systems with active membranes characterize PSPACEp. 33
All NP-problems can be solved in polynomial time by accepting networks of splicing processors of constant sizep. 47
Length-separating test tube systemsp. 58
Gene assembly algorithms for ciliatesp. 71
Spectrum of a pot for DNA complexesp. 83
On the complexity of graph self-assembly in accretive systemsp. 95
Viral genome compressionp. 111
DNA codes and their propertiesp. 127
In search of optimal codes for DNA computingp. 143
DNA sequence design by dynamic neighborhood searchesp. 157
Sequence design for stable DNA tilesp. 172
Hairpin structures defined by DNA trajectoriesp. 182
Design and simulation of self-repairing DNA latticesp. 195
On times to compute shapes in 2D tile self-assemblyp. 215
Capabilities and limits of compact error resilience methods for algorithmic self-assembly in two and three dimensionsp. 223
A mathematical approach to cross-linked structures in viral capsids : predicting the architecture of novel containers for drug deliveryp. 239
A framework for modeling DNA based molecular systemsp. 250
Uniquimer : a de novo DNA sequence generation computer software for DNA self-assemblyp. 266
A probabilistic model of the DNA conformational changep. 274
Simulations of microreactors : the order of thingsp. 286
DNA hypernetworks for information storage and retrievalp. 298
Abstraction layers for scalable microfluidic biocomputersp. 308
Fuzzy forecasting with DNA computingp. 324
"Reasoning" and "talking" DNA : can DNA understand English?p. 337
A new readout approach in DNA computing based on real-time PCR with TaqMan probesp. 350
Automating the DNA computer : solving n-variable 3-SAT problemsp. 360
Local area manipulation of DNA molecules for photonic DNA memoryp. 374
Unravel four hairpins!p. 381
Displacement whiplash PCR : optimized architecture and experimental validationp. 393
MethyLogic : implementation of Boolean logic using DNA methylationp. 404
Development of DNA relational database and data manipulation experimentsp. 418
Experimental validation of the statistical thermodynamic model for prediction of the behavior of autonomous molecular computers based on DNA hairpin formationp. 428
Table of Contents provided by Blackwell. All Rights Reserved.

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