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An Engineer's Guide to Genetic Circuits | |
Chemical Reactions | |
Macromolecules | |
Genomes | |
Cells and Their Structure | |
Genetic Circuits | |
Viruses | |
Phage lambda: A Simple Genetic Circuit | |
Learning Models | |
Experimental Methods | |
Experimental Data | |
Cluster Analysis | |
Learning Bayesian Networks | |
Learning Causal Networks | |
Experimental Design | |
Differential Equation Analysis | |
A Classical Chemical Kinetic Model | |
Differential Equation Simulation | |
Qualitative ODE Analysis | |
Spatial Methods | |
Stochastic Analysis | |
A Stochastic Chemical Kinetic Model | |
The Chemical Master Equation | |
Gillespie's Stochastic Simulation Algorithm | |
Gibson/Bruck's Next Reaction Method | |
Tau-Leaping | |
Relationship to Reaction Rate Equations | |
Stochastic Petri-Nets | |
Phage lambda Decision Circuit Example | |
Spatial Gillespie | |
Reaction-Based Abstraction | |
Irrelevant Node Elimination | |
Enzymatic Approximations | |
Operator Site Reduction | |
Statistical Thermodynamical Model | |
Dimerization Reduction | |
Phage lambda Decision Circuit Example | |
Stoichiometry Amplification | |
Logical Abstraction | |
Logical Encoding | |
Piecewise Models | |
Stochastic Finite-State Machines | |
Markov Chain Analysis | |
Qualitative Logical Models | |
Genetic Circuit Design | |
Assembly of Genetic Circuits | |
Combinational Logic Gates | |
PoPS Gates | |
Sequential Logic Circuits | |
Future Challenges | |
Solutions to Selected Problems | |
References | |
Glossary | |
Index | |
Sources and Problems appear at the end of each chapter | |
Table of Contents provided by Publisher. All Rights Reserved. |
The New copy of this book will include any supplemental materials advertised. Please check the title of the book to determine if it should include any access cards, study guides, lab manuals, CDs, etc.
The Used, Rental and eBook copies of this book are not guaranteed to include any supplemental materials. Typically, only the book itself is included. This is true even if the title states it includes any access cards, study guides, lab manuals, CDs, etc.