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9781621823896

The Nucleus, Second Edition

by ; ;
  • ISBN13:

    9781621823896

  • ISBN10:

    162182389X

  • Edition: 2nd
  • Format: Hardcover
  • Copyright: 2021-10-31
  • Publisher: Cold Spring Harbor Laboratory Press

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Summary

The nucleus is the most prominent structure in eukaryotic cells. It houses the cell’s DNA and is the hub for DNA replication, transcription, and RNA processing. Despite its prominence and importance, our understanding of how the nucleus and its DNA are organized in space and time—and the implications of that organization for proper function—has lagged behind that of other cellular structures.

Written and edited by experts in the field, this collection from Cold Spring Harbor Perspectives in Biology covers recent advances in our understanding of nuclear organization and function. The contributors discuss the 3D organization of chromatin, the various nuclear bodies and compartments that have been identified, and the roles of RNA and actin in shaping nuclear organization, as well as how these structures interact with each other and with peripheral features (e.g., the nuclear pore complex and inner nuclear membrane proteins) to carry out the work of the nucleus. Insights into DNA replication timing and RNA processing dynamics based on new technologies aimed at examining chromatin and other intranuclear structures at high resolution are also included.

Multiple chapters are devoted to physiological and disease processes involving disruption of nuclear structure and function (e.g., viral infection). This volume is therefore essential reading for all cell and molecular biologists, as well as pathologists interested in the role of nuclear architecture in disease.

Table of Contents


(Preliminary)

NUCLEAR ENVELOPE
1. The Nuclear Lamina
Xianrong Wong, Ashley J. Melendez-Perez, and Karen L. Reddy
2. Structure, Maintenance, and Regulation of Nuclear Pore Complexes: The Gatekeepers of the Eukaryotic Genome
Marcela Raices and Maximiliano A. D'Angelo
3. The Nuclear Pore Complex as a Transcription Regulator
Michael Chas Sumner and Jason Brickner
4. The Diverse Cellular Functions of Inner Nuclear Membrane Proteins
Sumit Pawar and Ulrike Kutay

PRINCIPLES OF ORGANIZATION
5. Mechanical Forces in Nuclear Organization
Yekaterina A. Miroshnikova and Sara. A. Wickström
6. Liquid-Liquid Phase Separation in Chromatin
Karsten Rippe
7. The Stochastic Genome and Its Role in Gene Expression
Christopher H. Bohrer and Daniel R. Larson
8. Emerging properties and functions of actin and actin filaments inside the nucleus
Svenja Ulferts, Bina Prajapati, Robert Grosse, and Maria K. Vartiainen

CHROMATIN
9. Physical Nature of Chromatin in the Nucleus
Kazuhiro Maeshima, Shiori Iida, and Sachiko Tamura
10. Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions
Leonid Mirny and Job Dekker
11. Uncovering the Principles of Genome Folding by 3D Chromatin Modeling
Asli Yildirim, Lorenzo Boninsegna, Yuxiang Zhan, and Frank Alber
12. Transcription Factor Dynamics
Feiyue Lu and Timothée Lionnet
13. Essential Roles for RNA in Shaping Nuclear Organization
Sofia A. Quinodoz and Mitchell Guttman
14. Nuclear Compartments: An Incomplete Primer To Nuclear Compartments, Bodies, And Genome Organization Relative To Nuclear Architecture
Andrew S. Belmont

NUCLEAR PROCESSES
15. The Impact of Space and Time on the Functional Output of the Nucleus
Marcelo Nollmann, Isma Bennabi, Markus Götz, and Thomas Gregor
16. Mammalian DNA Replication Timing
Athanasios E. Vouzas and David M. Gilbert
17. Imaging Organization of RNA Processing Within the Nucleus
Jeetayu Biswas, Weihan Li, Robert H. Singer, and Robert A. Coleman

PHYSIOLOGICAL PROCESSES AND DISEASE
18. Chromatin Mechanisms Driving Cancer
Berkley Gryder, Pete Scacheri, Thomas Ried, and Javed Khan
19. Viruses in the Nucleus
Bojana Lucic, Ines J. de Castro, and Marina Lusic
20. 3D or Not 3D: Shaping the Genome During Development
Juliane Glaser and Stefan Mundlos
21. Epigenetic Reprogramming in Early Animal Development
Zhenhai Du, Ke Zhang, and Wei Xie
22. The Molecular and Nuclear Dynamics of X-Chromosome Inactivation
François Dossin and Edith Heard
23. Organization of the Pluripotent Genome
Patrick S.L. Lim and Eran Meshorer

Index

Supplemental Materials

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