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Protein: Structure, Function, and Interaction | |
Sequence Based Prediction of Protein Mutant Stability and Discrimination of Thermophilic Proteins | p. 1 |
A Method to Find Sequentially Separated Motifsin Biological Sequences (SSMBS) | p. 13 |
Predicting SUMOylation Sites | p. 28 |
DFS Based Partial Pathways in GA for Protein Structure Prediction | p. 41 |
Evaluation of the Stability of Folding Nucleus upon Mutation | p. 54 |
Prediction of Protein Beta-Sheets: Dynamic Programming Versus Grammatical Approach | p. 66 |
Using Multi-scale Glide Zoom Window Feature Extraction Approach to Predict Protein Homo-oligomer Types | p. 78 |
Extraction of Binding Sites in Proteins by Searching for Similar Local Molecular Surfaces | p. 87 |
Learning, Classification, and Clustering | |
A Clustering Based Hybrid System for Mass Spectrometry Data Analysis | p. 98 |
A Modified Markov Clustering Approach for Protein Sequence Clustering | p. 110 |
Feature Selection and Classification for Small Gene Sets | p. 121 |
Pseudoknot Identification through Learning TAG[subscript RNA] | p. 132 |
Support Vector Based T-Score for Gene Ranking | p. 144 |
Prediction of Transcription Factor Families Using DNA Sequence Features | p. 154 |
g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines | p. 165 |
Bio-Molecular Networks and Pathways Analysis | |
Domain-Domain Interaction Identification with a Feature Selection Approach | p. 178 |
Dividing Protein Interaction Networks by Growing Orthologous Articulations | p. 187 |
Constraint Minimization for Efficient Modeling of Gene Regulatory Network | p. 201 |
Fusion of Gene Regulatory and Protein Interaction Networks Using Skip-Chain Models | p. 214 |
TopEVM: Using Co-occurrence and Topology Patterns of Enzymes in Metabolic Networks to Construct Phylogenetic Trees | p. 225 |
Generating Synthetic Gene Regulatory Networks | p. 237 |
Microarray and Gene Expression Analysis | |
Gene Selection for Microarray Data by a LDA-Based Genetic Algorithm | p. 250 |
Sequential Forward Selection Approach to the Non-unique Oligonucleotide Probe Selection Problem | p. 262 |
On Finding and Interpreting Patterns in Gene Expression Data from Time Course Experiments | p. 276 |
Microarray Design Using the Hilbert-Schmidt Independence Criterion | p. 288 |
Identifying Non-random Patterns from Gene Expression Profiles | p. 299 |
A Study on the Importance of Differential Prioritization in Feature Selection Using Toy Datasets | p. 311 |
Weighted Top Score Pair Method for Gene Selection and Classification | p. 323 |
Data Mining and Knowledge Discovery | |
Identifying Conserved Discriminative Motifs | p. 334 |
Exploratory Data Analysis for Investigating GC-MS Biomarkers | p. 349 |
Multi-relational Data Mining for Tetratricopeptide Repeats (TPR)-Like Superfamily Members in Leishmania spp.: Acting-by-Connecting Proteins | p. 359 |
Heuristic Non Parametric Collateral Missing Value Imputation: A Step Towards Robust Post-Genomic Knowledge Discovery | p. 373 |
Protein Expression Molecular Pattern Discovery by Nonnegative Principal Component Analysis | p. 388 |
Gene Ontology Assisted Exploratory Microarray Clustering and Its Application to Cancer | p. 400 |
Discovery of Biomarkers for Hexachlorobenzene Toxicity Using Population Based Methods on Gene Expression Data | p. 412 |
Applications of High Performance Computing | |
Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study | p. 424 |
Massively Parallelized DNA Motif Search on the Reconfigurable Hardware Platform COPACOBANA | p. 436 |
GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences | p. 448 |
Accelerating BLASTP on the Cell Broadband Engine | p. 460 |
Author Index | p. 471 |
Table of Contents provided by Ingram. All Rights Reserved. |
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The Used, Rental and eBook copies of this book are not guaranteed to include any supplemental materials. Typically, only the book itself is included. This is true even if the title states it includes any access cards, study guides, lab manuals, CDs, etc.