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Definitions and Methodology | |
Introduction to graphs | p. 7 |
Graphs, directed graphs, and weighted graphs | p. 10 |
Trees | p. 18 |
Vertex correlation, assortativity | p. 23 |
Hierarchical properties of graphs | p. 29 |
The properties of scale-free networks | p. 30 |
Graph structures: communities | p. 34 |
Introduction | p. 34 |
Typical subgraphs, motifs | p. 36 |
Classes of vertices | p. 38 |
Centrality measures, betweenness, and robustness | p. 39 |
Clustering detection, modularity | p. 41 |
Communities in graphs | p. 43 |
Scale-invariance | p. 60 |
Geometrical scale-invariance: fractals | p. 62 |
Measuring the fractal dimension | p. 67 |
Scale-invariance and power laws | p. 70 |
Plotting a power law | p. 71 |
Scale-invariance in natural sciences | p. 74 |
Scale-invariance in economics and in social sciences | p. 81 |
The origin of power-law functions | p. 84 |
Random walk, Laplace equation, and fractals | p. 86 |
Power laws from minimization principles | p. 92 |
Multiplicative processes and normal distribution | p. 95 |
Preferential attachment, the Matthew effect | p. 100 |
Graph generating models | p. 103 |
Random graph model | p. 105 |
The small-world model | p. 108 |
The Barabasi-Albert model | p. 112 |
Modifications to the Barabasi-Albert model | p. 114 |
Copying models | p. 118 |
Fitness based model | p. 119 |
Graph from optimization principles | p. 123 |
Examples | |
Networks in the cell | p. 131 |
Basic cell biology | p. 134 |
Protein-protein interaction network | p. 138 |
Metabolic pathways | p. 142 |
Gene regulatory networks | p. 146 |
Geophysical networks | p. 148 |
Satellite images and digital elevation models | p. 150 |
Geometrical scale invariance for river networks | p. 152 |
Scaling relations for river networks | p. 155 |
River networks models | p. 157 |
River networks on Mars' surface | p. 164 |
Ecological networks | p. 167 |
Species and evolution | p. 170 |
Food webs: a very particular case of network | p. 173 |
Food web quantities | p. 174 |
Classifications of species | p. 179 |
Yule process for taxonomies | p. 180 |
Technological networks: Internet and WWW | p. 185 |
The Internet protocols | p. 188 |
The geography of the Internet | p. 193 |
The autonomous systems | p. 196 |
The scale-invariance in the Internet | p. 197 |
The World Wide Web | p. 199 |
Searching the web | p. 200 |
Statistical measures of the Web | p. 205 |
E-mail networks | p. 208 |
Social and cognitive networks | p. 211 |
Networks of scientific papers | p. 213 |
Contact networks | p. 219 |
Linguistic networks | p. 224 |
Wikipedia | p. 229 |
Financial networks | p. 231 |
Board of directors | p. 233 |
Stock networks | p. 235 |
Bank networks | p. 245 |
The world trade web | p. 248 |
Appendices | |
Glossary | p. 253 |
Graph quantities | p. 256 |
Basics | p. 256 |
Different kinds of graphs | p. 257 |
Paths, cycles, and trees | p. 260 |
Basic statistics | p. 262 |
Events and probability | p. 262 |
Probability densities and distributions | p. 263 |
Working with statistical distributions | p. 267 |
Statistical properties of weighted networks | p. 272 |
Matrices and eigenvectors | p. 275 |
Population dynamics | p. 277 |
Population dynamics | p. 277 |
Bibliography | p. 283 |
Index | p. 307 |
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