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| Preface | p. ix |
| Program Committee | p. xi |
| Exploring the Effect of Variable Enzyme Concentrations in a Kinetic Model of Yeast Glycolysis | p. 1 |
| The Role of IP3R Clustering in Ca2+ Signaling | p. 15 |
| Rule-Based Reasoning for System Dynamics in Cell Systems | p. 25 |
| Estimation of Nonlinear Gene Regulatory Networks via L1 Regularized NVAR from Time Series Gene Expression Data | p. 37 |
| ModelMage: A Tool for Automatic Model Generation, Selection and Management | p. 52 |
| A Framework for Determining Outlying Microarray Experiments | p. 64 |
| Exploring the Impact of Osmoadaptation on Glycolysis Using Time-Varying Response-Coefficients | p. 77 |
| Comparing Flux Balance Analysis to Network Expansion: Producibility, Sustainability and the Scope of Compounds | p. 91 |
| Semi-Supervised Graph Partitioning with Decision Trees | p. 102 |
| Measuring Correlations in Metabolomic Networks with Mutual Information | p. 112 |
| Optimality Criteria for the Prediction of Metabolic Fluxes in Yeast Mutants | p. 123 |
| Biosynthetic Potentials from Species-Specific Metabolic Networks | p. 135 |
| Generalized Reaction Patterns for Prediction of Unknown Enzymatic Reactions | p. 149 |
| Optimal Metabolic Regulation Using a Constraint-Based Model | p. 159 |
| Comparative Determination of Biomass Composition in Differentially Active Metabolic States | p. 171 |
| Suffix Techniques as a Rapid Method for RNA Substructure Search | p. 183 |
| The Relationship between Fine Scale DNA Structure, GC Content, and Functional Elements in 1% of the Human Genome | p. 199 |
| A Novel Strategy to Search Conserved Transcription Factor Binding Sites Among Coexpressing Genes in Human | |
| Modeling IL-2 Gene Expression in Human Regulatory T Cells | p. 222 |
| Toxicity versus Potency: Elucidation of Toxicity Properties Discriminating between Toxins, Drugs, and Natural Compounds | p. 231 |
| Comparative VEGF Receptor Tyrosine Kinase Modeling for the Development of Highly Specific Inhibitors of Tumor Angiogenesis | p. 243 |
| Network Analysis of Adverse Drug Interactions | p. 252 |
| Sampling Geometries of Protein-Protein Complexes | p. 260 |
| Computer Aided Optimization of Carbon Atom Labeling for Tracer Experiments | p. 270 |
| Web-Links as a Means to Document Annotated Sequence and 3D-Structure Alignments in Systems Biology | p. 277 |
| Author Index | p. 285 |
| Table of Contents provided by Ingram. All Rights Reserved. |
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