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9783540488378

Transactions on Computational Systems Biology VII

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  • ISBN13:

    9783540488378

  • ISBN10:

    3540488375

  • Format: Paperback
  • Copyright: 2007-01-03
  • Publisher: Springer Verlag
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Summary

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena.This volume, the 7th in the Transactions on Computational Systems Biology series, contains a fully-refereed and carefully selected set of papers from the two workshops BioConcur 2004 held in London, UK in August 2004 and BioConcur 2005 held in San Francisco, CA, USA in August 2005.The 8 papers selected for this special issue are devoted to various aspects of computational methods, algorithms and techniques in bioinformatics such as modeling of signalling pathways, gene regulation in pi-calculus, relations between regulator graphs and Petri nets, translation of SBML models to stochastic pi-calculus, use of graph theory to model biological networks, distributed model checking with biochemical Kripke structures, graphical notation for stochastic pi-calculus, as well as differentiation and homeostatic behavior of boolean dynamic systems.

Table of Contents

Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPAp. 1
Gene regulation in the pi calculus : simulating cooperativity at the lambda switchp. 24
From logical regulatory graphs to standard Petri nets : dynamical roles and functionality of feedback circuitsp. 56
Translating SBML models into the stochastic [Pi]-calculus for stochastic simulationp. 73
Graph theory for rule-based modeling of biochemical networksp. 89
Adapting biochemical Kripke structures for distributed model checkingp. 107
A graphical representation for biological processes in the stochastic pi-calculusp. 123
On differentiation and homeostatic behaviours of Boolean dynamical systemsp. 153
A specification language and a framework for the execution of composite models in systems biologyp. 163
Table of Contents provided by Blackwell. All Rights Reserved.

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